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GCSE level biology exam revision notes - human health Part 2

Body defences: 2.3 Chemical ways our body defend itself against pathogens e.g. in the eyes, stomach, gut and skin

[Author © Dr Phil Brown PhD: Doc Brown's biology exam revision notes suitable for students of UK IGCSE & GCSE level biology courses & ~ US grades 9-10 biology [healthy-2- page dated Mar 25th 2026 *]

[Key points and learning objectives for this page, after the main body of notes]

Sub-index of notes: Our body's defence mechanisms against infections from pathogens, help from vaccines & drugs

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(3) How do our bodies defend themselves against infectious diseases?

Some examples of chemical agents our body produces

(a) Chemical protection by killing pathogens

Our eyes produce a chemical called lysozyme in tears, that kills bacterial microorganisms on the surface of the eye.

Lysozymes are enzymes that break down the cell walls of bacteria, so destroying the bacteria on the surface of the eye.

Lysozymes are found in several secretions produced by the body.

 

(b) The stomach produces strong hydrochloric acid, an acid that kills most pathogens, and a safe distance from the sensitive tissue of the mouth and tongue!

Your stomach contains quite concentrated strong hydrochloric acid which kills the majority of pathogenic bacteria that get well beyond the mouth - sadly not all of them at times!

The saliva produced in your mouth contains molecules that can kill some of the pathogens that enter the mouth.

 

(c) Beyond the stomach

Not all the remaining pathogens that reach the stomach from the mouth are killed by the hydrochloric acid.

Some pathogens enter the intestines and have to compete with the 'local' bacteria for food to survive.

Your gut is full of bacteria - the gut is their natural habitat.

 

(d) The skin: As well as acting as a physical barrier, your skin also has sebaceous glands that secrete antimicrobial molecules that can kill pathogens.

The sebaceous glands are an 'offshoot' of the hair shaft, out of which the hair grows.

These chemical defences are non-specific and can counteract a variety of types of pathogens


Key points Source of information is based on textbooks & syllabus-specifications for students taking the AQA GCSE, Edexcel GCSE and OCR GCSE level biology examinations (~US grades 9-10).

Key points and more examples about the body's chemical systems for defending itself against pathogens

Notes for biology students on chemical defences in the human body and why they’re so important in understanding immunity and disease prevention:


Chemical Defences Against Pathogens

While physical barriers aim to block pathogens from entering the body, chemical defences destroy or neutralise them once they’ve breached—or to reinforce physical defences.

These are non-specific defence mechanisms, meaning they’re not tailored to a particular pathogen but instead protect against a wide range of microbes.

1. Lysozymes (in Tears, Saliva, and Mucus)

  • Function: Lysozymes are enzymes that attack bacterial cell walls.

  • Where found:

    • Tears (lachrymal glands)

    • Saliva (salivary glands)

    • Nasal mucus and other mucosal secretions

  • Action: They hydrolyse the peptidoglycan in bacterial cell walls, causing them to rupture.

2. Hydrochloric Acid in the Stomach

  • Extremely low pH (~1–2) kills most pathogens ingested through food and drink.

  • Destroys microbes that may enter with swallowed mucus from the respiratory tract.

  • Not specific to any one pathogen—effective against most bacteria and viruses.

3. Sebum (Oily Secretion from Skin)

  • Besides being a physical barrier, sebum also has antimicrobial properties.

  • It helps lower skin pH, creating an environment hostile to many pathogens.

4. Vaginal Secretions

  • Have an acidic pH due to lactic acid produced by natural flora.

  • This acidity inhibits the growth of pathogens, providing protection.


Why These Defences Matter for Human Biology and Exams

Understanding Immunity

  • Builds the foundation before you study specific immunity (like lymphocytes and antibodies).

  • Highlights the body’s immediate, broad-spectrum defence tactics.

Common GCSE Question Topic

  • Often part of “describe how the body defends itself non-specifically” type questions.

  • May be tested alongside physical barriers in multiple-choice or extended-answer formats.

Link to Health and Disease

  • Understanding these defences helps explain:

    • Why hand-to-mouth transmission is risky.

    • Why stomach acid reducers (like antacids) might make someone more vulnerable.

    • How disrupting these secretions can lead to secondary infections.


Learning objectives for this section on our body's chemical defences against pathogens

Be able to describe chemical ways in which the body defends itself against pathogens.

Know that lysozyme in tears protects against pathogens potentially infecting our eyes.

Know about the action of the strong acid, hydrochloric acid in our stomach that kills bacteria.

Know that our skin has sebaceous glands that secrete antimicrobial molecules to kill bacteria.

  • Be able to explain how the human body can be effective against attack from pathogens, including:
    • The body has different physical and chemical ways of protecting itself against pathogens.
    • b) Chemical defence – hydrochloric acid in the stomach, lysozymes in tears
      • Chemical protection by killing pathogens

      • In tears our eyes produce chemicals called lysozymes that kill bacterial microorganisms on the surface of the eye.

      • Your stomach contains quite concentrated hydrochloric acid which kills the majority of pathogenic bacteria - sadly not all of them at times!


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